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Shawn Ahmed, PhD
Assistant Professor


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Research Interests

Key words: Telomere Replication, DNA Damage, Germline Immortality

My laboratory is interested in telomere replication, in DNA damage, and germline immortality. We are studying these problems using the nematode Caenorhabditis elegans, which is a higher eukaryote with very good genetics.

How does the germline achieve immortality?

The germline is an immortal cell lineage that is passed from one generation to the next, indefinitely. Very little has been done to addess the problem of germline immortality experimentally. In order to determine how the germline achieves immortality, I decided to look for C. elegans mutants with mortal germlines - mutants which could grow for several healthly generations but eventually became sterile (ie, their germlines accumulate some kind of damage which eventually results in sterility). There are probably 50 to 100 genes which can mutate to give a Mortal Germline phenotype (Figure 1).



Figure 1. mortal germline mutants eventually become sterile.

We would like to understand the protective mechanisms which ensure that the germline achieves youth, vigor and immortality. Pathways that protect C. elegans germline cells against damage should be broadly relevant to the human problems of cancer and aging, which occur as a result of cellular damage.

How are telomeres replicated?

Telomeres, the ends of linear chromosomes, are usually composed of simple repetitive sequences. In most organisms, telomere length is maintained by an enzyme called telomerase, which adds repeats to the ends of chromosomes. Studies in yeast and other organisms have identified a number of genes that are required for telomere replication. About 10% of mortal germline mutants described above appear to be completely defective for telomerase (Figure 2). One of these telomerase-defective mutants, mortal germline-2, has been cloned and encodes a DNA damage checkpoint gene, which suggests that telomeres may be identified as a special kind of DNA damage prior to telomere replication. We plan to identify and study more genes that are required for telomere replication inC. elegans - this small nematode has the advantage of being the most highly evolved multicellular eukaryote (ie, closest to humans) in which an unbiased genetic approach can be used to study the problem of telomere replication.


Figure 2. Telomere replication defects such as (a) telomere shortening and (b) end-to-end chromosome fusions are observed in a subset of mortal germline mutants, suggesting that telomerase does not function properly in these mutants.

How is DNA damage detected and repaired?

We are interested in proteins that detect or repair DNA damage, and in how such proteins might affect telomere replication.


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Publications

Julie Boerckel, Dana Walker and Shawn Ahmed (2007). The RFC-like subunit HPR-17 is required for telomere replication in C. elegans. Genetics: in press.

Shawn Ahmed (2006). Uncoupling of pathways that promote post-mitotic lifespan and apoptosis from replicative immortality of C. elegans germ cells. Aging Cell 5: 559-563.

Theresa Zucchero and Shawn Ahmed (2006). Genetics of proliferative aging. Experimental Gerontology 41: 992-1000.

Japser Harris, Mia Lowden, Iuval Clejan, Monika Tzoneva, James Thomas, Jonathan Hodgkin and Shawn Ahmed (2006). Mutator phenotype of C. elegans DNA damage checkpoint mutants. Genetics 174: 1-16. (Article Highlighted in October issue of Genetics)

Iuval Clejan, Julie Boerckel and Shawn Ahmed (2006). Developmental modulation of non-homologous end-joining in C. elegans. Genetics 173: 1301-1317.

Bettina Meier, Iuval Clejan, Yan Liu, Mia Lowden, Anton Gartner, Jonathan Hodgkin, and Shawn Ahmed (2006). trt-1 is the C. elegans catalytic subunit of telomerase. PLoS Genetics 2: e18.

Chris Smelick and Shawn Ahmed (2005). Achieving immortality in the C. elegans germline. Aging Research Reviews 4: 67-82.

Jacapo Novelli, Shawn Ahmed and Jonathan Hodgkin (2004). Gene interactions in Caenorhabditis elegans define DPY-31 as a candidate procollagen C-proteinase and SQT-3/ROL-4 as its predicted major target. Genetics 168: 1259-1273.

Shawn Ahmed, Arno Alpi, Michael O. Hengartner and Anton Gartner (2001). C. elegans RAD-5/CLK-2 defines a new DNA damage checkpoint protein. Current Biology 11: 1934-1944.

Bettina Meier and Shawn Ahmed (2001). Checkpoints: Meiotic chromosome pairing takes an unexpected twist. Current Biology 11: R865-R868.

Anton Gartner, Stuart Milstein, Shawn Ahmed, Jonathan Hodgkin and Michael O. Hengartner (2000). A conserved checkpoint pathway mediates DNA damage-induced apoptosis and cell cycle arrest in C. elegans. Molecular Cell 5: 435-443.

Shawn Ahmed and Jonathan Hodgkin (2000). MRT-2 checkpoint protein is required for germline immortality and telomere replication in C. elegans. Nature 403: 159-164.

Shawn Ahmed, Hong Sheng, Luming Niu and Eric Henderson (1998). Tetrahymena mutants with short telomeres. Genetics 150: 643-650.

Shawn Ahmed, Augustin Kintanar and Eric Henderson (1994). Human telomeric C-strand tetraplexes. Nature Structural Biology 1: 83-88.

Shawn Ahmed and Eric Henderson (1992). Formation of novel hairpin structures by telomeric C-strand oligonucleotides. Nucleic Acids Research 20: 507-511.


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Trainees

Bettina Meier, Postdoctoral Fellow: telomerase
Iuval Clejan, Postdoctoral Fellow: aging
Julie Boerckel, Graduate Student: DNA repair
Mia Lowden, Graduate Student: telomerase
Yan Liu, Research Technician: telomerase
Jasper Harris, Undergraduate: DNA repair
Sarah Mense, Undergraduate: telomerase
Yan Zhao, Undergraduate: telomerase
Josh Eudailey, Undergraduate: germline immortality.

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Contact Information

215 Fordham, CB#3280
Chapel Hill, NC 27599-3280

Web: http://www.bio.unc.edu/ahmed/lab/

Office: 919.843.4780
Lab: 843.4388
Fax: 962.8472

Web:
http://www.bio.unc.edu/ahmed/lab/
Email: shawn<at>med.unc.edu

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